Bioconductor Batch Effect Correction

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786

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batch effect limma batch effect correction

updated 5.2 years ago by Gordon Smyth 50k • written 5.2 years ago by ginlucks • 0

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750

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pvca batch effect batch effect correction

5.5 years ago Sebastian Hesse ▴ 70

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1.0k

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batch effect correction sva proteomics

5.5 years ago Sebastian Hesse ▴ 70

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1.3k

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deseq2 interactions batch effect correction grouping variable

updated 5.6 years ago by Michael Love 42k • written 5.6 years ago by mat.lesche ▴ 90

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2.1k

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scan.upc upc normalization batch effect correction

updated 5.7 years ago by Stephen Piccolo ▴ 590 • written 5.7 years ago by y.li.1 • 0

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1.6k

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Limma differential gene expression batch effect correction covariates

updated 5.9 years ago by Gordon Smyth 50k • written 5.9 years ago by abelsousa • 0

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3.1k

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DESeq2 sva svaseq batch effect correction

6.3 years ago L_K • 0

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1.2k

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sva svaseq batch effect batch effects batch effect correction

6.7 years ago vedran.franke • 0

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1.0k

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limma voom Batch Effect Correction

updated 7.1 years ago by Aaron Lun ★ 28k • written 7.1 years ago by Dario Strbenac ★ 1.5k

9 results • Page 1 of 1

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Answer: Differential gene expression analysis results by ATpoint ★ 4.1k

Pease do not open multiple posts for the same issue: https://support.bioconductor.org/p/9158194/#9158222 The support site is not meant f…

Comment: deseq2 results by sajadahmad41454 • 0

thank you for your response, should i remove or discard that sample? since the red outlier on left represents one of healthy samples.

Comment: deseq2 results by swbarnes2 ★ 1.4k

It looks like the PCA plot of a real RNASeq experiment. The red outlier on the left might be the mathematical reason why you have few vali…

Comment: Multi-factorial, longitudinal disease progression analysis with unbalanced patie by Dylan.Sheerin • 0

Thank you very much, Gordon. I'll give voomLmFit a go!

Answer: Multi-factorial, longitudinal disease progression analysis with unbalanced patie by Gordon Smyth 50k

Including subjectID in the design matrix always accounts for unbalanced sampling and patient variation but subjects with incomplete records…

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Comment: deseq2 results

Answer: Multi-factorial, longitudinal disease progression analysis with unbalanced patie

Answer: Extremely small p-values using Limma for proteomic data

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